http://lurena.vox.com/explore/friends/library/posts/page/1/ This mind has wobbled permanently to http://themindwobbles.wordpress.com en Vox Tue, 11 Sep 2007 09:15:54 +0100 Copyright 2007 http://blogs.law.harvard.edu/tech/rss http://drdozer.vox.com/library/post/myexperiment-a-myspace-for-the.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/myexperiment-a-myspace-for-the.html?_c=feed-rss http://drdozer.vox.com/library/post/myexperiment-a-myspace-for-the.html?_c=feed-rss Tue, 11 Sep 2007 09:15:54 +0100 myExperiment: A MySpace for the self-serving bioinformatician (Carole Goble) I hurt. I have a hang-over in my eyebrows, nose, ears, toes,... Don't drink sour beer. Just say NO. Carole certiainly knows the art of swearing in the right places duri... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/myexperiment-a-myspace-for-the.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a722fd0002?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/oxl---part-of-ondex-the.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/oxl---part-of-ondex-the.html?_c=feed-rss http://drdozer.vox.com/library/post/oxl---part-of-ondex-the.html?_c=feed-rss Mon, 10 Sep 2007 16:21:09 +0100 OXL - part of ondex, the 'native' xml format for post-integration data. Do xml dumbly - glue all links in-place --note: how does it handle cycles then? Seems like a thinly-veiled excuse to give an ondex talk, showing pictures it draws. Emperor's... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/oxl---part-of-ondex-the.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6d4a80001?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/analysis-of-integrated-biomolecular.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/analysis-of-integrated-biomolecular.html?_c=feed-rss http://drdozer.vox.com/library/post/analysis-of-integrated-biomolecular.html?_c=feed-rss Mon, 10 Sep 2007 16:05:05 +0100 Analysis of Integrated biomolecular somethings - CABiNET Same old slide about integrating networks - different ones, different types, with external kinds of data. CABiNET - semi-automated network processing pipeline e.g. to identify funcitonal i... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/analysis-of-integrated-biomolecular.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6df590002?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/vinedb-a-data-warehouse-for.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/vinedb-a-data-warehouse-for.html?_c=feed-rss http://drdozer.vox.com/library/post/vinedb-a-data-warehouse-for.html?_c=feed-rss Mon, 10 Sep 2007 15:40:56 +0100 VINEdb: a data warehouse for integration and interactive exploration of life science data Data warehouse - project underlying data and its complexity in an effective way to the end user - deeper insights into complex biological systems Is he go... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/vinedb-a-data-warehouse-for.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6f1cd0005?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/exploring-psi-mi-xml-collections-using.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/exploring-psi-mi-xml-collections-using.html?_c=feed-rss http://drdozer.vox.com/library/post/exploring-psi-mi-xml-collections-using.html?_c=feed-rss Mon, 10 Sep 2007 15:25:14 +0100 Exploring PSI-MI XML Collections using describeX XML is widely used by bioinformatics community. They claim the flexibility of xml introduces heterogenity. I'd prefer to think that it allowed latent hetergenity to be exposed. DescribeX builds xm... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/exploring-psi-mi-xml-collections-using.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6d0000001?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/data-linkage-graph-computation.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/data-linkage-graph-computation.html?_c=feed-rss http://drdozer.vox.com/library/post/data-linkage-graph-computation.html?_c=feed-rss Mon, 10 Sep 2007 14:39:30 +0100 Data Linkage Graph: computation, querying and knowledfe discovery of life science data. Databases in sciences are structured. Databases are organised by domains. --note: of course, this is wrong on both counts - they are badly structured and have... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/data-linkage-graph-computation.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6cc1a0001?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/bioxmash-xml-data-summaries-for.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/bioxmash-xml-data-summaries-for.html?_c=feed-rss http://drdozer.vox.com/library/post/bioxmash-xml-data-summaries-for.html?_c=feed-rss Mon, 10 Sep 2007 14:17:24 +0100 BioXMash: XML data summaries for user-driven data integration. Long-term goal: data integration for end-users. XML-based. Selection/projection on trees. Interactive querying. Indexing pseudo-off-line (e.g. index while at lunch, then have interac... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/bioxmash-xml-data-summaries-for.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6e6050004?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/community-based-linking-of-biological.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/community-based-linking-of-biological.html?_c=feed-rss http://drdozer.vox.com/library/post/community-based-linking-of-biological.html?_c=feed-rss Mon, 10 Sep 2007 13:51:00 +0100 Community-based linking of biological network resources: Database, Formats and Tools To understand your data, you do need to view it in context. Use the kind of network that will be relevant to your question. How to find Networks? Want structure... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/community-based-linking-of-biological.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6e46e0004?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/a-methodology-for-comparative-functinoal.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/a-methodology-for-comparative-functinoal.html?_c=feed-rss http://drdozer.vox.com/library/post/a-methodology-for-comparative-functinoal.html?_c=feed-rss Mon, 10 Sep 2007 13:19:43 +0100 A methodology for comparative functinoal genomics. (e-Fungi, Mike Cornell) Sequence analysis of 36 (to be 48) fungal genomes. Blasts, alignments, clusters, phylogeny, cellular localization, ... This seems to be old-school bioinformatics done wit... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/a-methodology-for-comparative-functinoal.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6e5670003?_c=feed-rss">Send to a friend</a> </p> http://drdozer.vox.com/library/post/keynote-1-understanding-interactomes-by.html?_c=feed-rss nobody@vox.com(drdozer) http://drdozer.vox.com/library/post/keynote-1-understanding-interactomes-by.html?_c=feed-rss http://drdozer.vox.com/library/post/keynote-1-understanding-interactomes-by.html?_c=feed-rss Mon, 10 Sep 2007 13:08:09 +0100 Keynote 1: Understanding interactomes by data integration Soren Brunak Protein-protein interaction networks - topology, temporal, phenotypic aspects. Text mining, predict 'disease genes'. Starting with the cell cycle (an intrinsically dynamic sy... <p style="clear:both;"> <a href="http://drdozer.vox.com/library/post/keynote-1-understanding-interactomes-by.html?_c=feed-rss#comments">Read and post comments</a> | <a href="http://www.vox.com/share/6a00d09e51d7d7be2b00e398a6e1af0004?_c=feed-rss">Send to a friend</a> </p>